RsamtoolsFileList {Rsamtools} | R Documentation |
A base class for managing lists of Rsamtools file references
Description
RsamtoolsFileList
is a base class for managing lists of file
references in Rsamtools; it is not intended for direct use –
see, e.g., BamFileList
.
Usage
## S4 method for signature 'RsamtoolsFileList'
path(object, ...)
## S4 method for signature 'RsamtoolsFileList'
index(object, ..., asNA = TRUE)
## S4 method for signature 'RsamtoolsFileList'
isOpen(con, rw="")
## S3 method for class 'RsamtoolsFileList'
open(con, ...)
## S3 method for class 'RsamtoolsFileList'
close(con, ...)
## S4 method for signature 'RsamtoolsFileList'
names(x)
## S4 method for signature 'RsamtoolsFileList'
yieldSize(object, ...)
Arguments
con , object , x |
An instance of a class derived from
|
asNA |
logical indicating if missing output should be NA or character() |
rw |
Mode of file; ignored. |
... |
Additional arguments. |
Objects from the Class
Users do not directly create instances of this class; see, e.g.,
BamFileList-class
.
Functions and methods
This class inherits functions and methods for subseting, updating, and
display from the SimpleList
class.
Methods:
- isOpen:
Report whether each file in the list is currently open.
- open:
Attempt to open each file in the list.
- close:
Attempt to close each file in the list.
- names:
Names of each element of the list or, if names are
NULL
, the basename of the path of each element.
Author(s)
Martin Morgan
[Package Rsamtools version 2.18.0 Index]