Mock Version: 6.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/morphio.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-c/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'unshare_net=TrueprintOutput=Truenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '84149a2ed9d047948bad4d59e5dc2d34', '-D', '/var/lib/mock/fedora-rawhide-x86_64-c/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/morphio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736985600 Wrote: /builddir/build/SRPMS/morphio-3.4.0-10.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', "/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-c/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Truenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ade1cec6297e455d9d9654ac5e7757f8', '-D', '/var/lib/mock/fedora-rawhide-x86_64-c/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', "/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736985600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.1Gx8Vk + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + test -d /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.arseOi + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd /builddir/build/BUILD/morphio-3.4.0-build + rm -rf MorphIO-3.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Downstream-only-Allow-passing-CMake-defs-through-an-.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/515.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/1.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/512.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*$.*(gsl-lite|GSL_LITE).*$/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + tomcli set pyproject.toml lists delitem --type regex --no-first build-system.requires '^(cmake|ninja)$' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.tZI3cQ + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement not satisfied: h5py>=2.9.0 Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement not satisfied: pytest>=6.0 Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 2.2.1) Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-10.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', "/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-c/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Truenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'db9ddc09f9054c1c9c42b8d5e0a21df3', '-D', '/var/lib/mock/fedora-rawhide-x86_64-c/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', "/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736985600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.bnS952 + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.4) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 2.2.1) Handling setuptools>=24.2.0 from build-system.requires Requirement not satisfied: setuptools>=24.2.0 Handling wheel from build-system.requires Requirement not satisfied: wheel Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-10.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', "/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-c/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Truenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6bb3c441a9d64a03a93e1948f5aa408f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-c/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', "/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736985600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.54ghXN + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.4) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 2.2.1) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling setuptools_scm from get_requires_for_build_wheel Requirement not satisfied: setuptools_scm Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-10.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', "/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-c/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Truenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b587b328c4564faa94ab7d700eb38341', '-D', '/var/lib/mock/fedora-rawhide-x86_64-c/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', "/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736985600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.GLKckK + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.4) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 2.2.1) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info' Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio) Requirement satisfied: numpy>=1.14.1 (installed: numpy 2.2.1) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires + rm -rfv morphio-3.4.0.dist-info/ removed 'morphio-3.4.0.dist-info/top_level.txt' removed 'morphio-3.4.0.dist-info/METADATA' removed 'morphio-3.4.0.dist-info/LICENSE.txt' removed 'morphio-3.4.0.dist-info/AUTHORS.txt' removed directory 'morphio-3.4.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-10.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', "/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-c/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'unshare_net=TrueprintOutput=Truenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7003342de2ce4f288bb0df4cb39f4b99', '-D', '/var/lib/mock/fedora-rawhide-x86_64-c/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2llsqy83:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', "/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 --nodeps --define '__spec_check_template exit 0; ' /builddir/build/SPECS/morphio.spec"] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736985600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.65HzXM + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.4) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 2.2.1) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info' Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio) Requirement satisfied: numpy>=1.14.1 (installed: numpy 2.2.1) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-buildrequires + rm -rfv morphio-3.4.0.dist-info/ removed 'morphio-3.4.0.dist-info/top_level.txt' removed 'morphio-3.4.0.dist-info/METADATA' removed 'morphio-3.4.0.dist-info/LICENSE.txt' removed 'morphio-3.4.0.dist-info/AUTHORS.txt' removed directory 'morphio-3.4.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3c3wVq + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_BINDINGS:BOOL=FALSE -DEXTERNAL_CATCH2:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_PYBIND11:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=FALSE -DMORPHIO_TESTS:BOOL=FALSE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.4.0 -DMorphIO_CXX_WARNINGS:BOOL=FALSE -GNinja -Wno-dev -- The C compiler identification is GNU 15.0.1 -- The CXX compiler identification is GNU 15.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP EXTERNAL_CATCH2 INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j64 --verbose Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 64 [1/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/version.cpp.o -MF src/CMakeFiles/morphio_obj.dir/version.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/version.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/version.cpp [2/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp [3/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/readers/utils.cpp.o -MF src/CMakeFiles/morphio_obj.dir/readers/utils.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/readers/utils.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/readers/utils.cpp [4/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/point_utils.cpp.o -MF src/CMakeFiles/morphio_obj.dir/point_utils.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/point_utils.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/point_utils.cpp [5/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/mut/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mut/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mut/endoplasmic_reticulum.cpp.o -c 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src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/errorMessages.cpp [7/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp [8/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o -MF src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/vasc/properties.cpp [9/41] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir Processing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info writing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-nmmjvjuf/morphio-3.4.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: morphio Building wheel for morphio (pyproject.toml): started Running command Building wheel for morphio (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/morphio copying morphio/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio creating build/lib.linux-x86_64-cpython-313/morphio/mut copying morphio/mut/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/mut creating build/lib.linux-x86_64-cpython-313/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/vasculature running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.0.1 -- The CXX compiler identification is GNU 15.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:42 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:45 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter -- Configuring done (2.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP HIGHFIVE_EXAMPLES HIGHFIVE_UNIT_TESTS -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313 Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313' Run Build Command(s): /usr/bin/ninja-build -v _morphio [1/48] 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binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_immutable.cpp [45/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_mutable.cpp [46/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o -MF src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/readers/morphologyASC.cpp [47/48] : && /usr/bin/cmake -E rm -f src/libmorphio_static.a && /usr/bin/ar qc src/libmorphio_static.a src/CMakeFiles/morphio_obj.dir/collection.cpp.o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o src/CMakeFiles/morphio_obj.dir/enums.cpp.o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o src/CMakeFiles/morphio_obj.dir/morphology.cpp.o src/CMakeFiles/morphio_obj.dir/mut/dendritic_spine.cpp.o src/CMakeFiles/morphio_obj.dir/mut/endoplasmic_reticulum.cpp.o src/CMakeFiles/morphio_obj.dir/mut/glial_cell.cpp.o src/CMakeFiles/morphio_obj.dir/mut/mito_section.cpp.o src/CMakeFiles/morphio_obj.dir/mut/mitochondria.cpp.o src/CMakeFiles/morphio_obj.dir/mut/modifiers.cpp.o src/CMakeFiles/morphio_obj.dir/mut/morphology.cpp.o src/CMakeFiles/morphio_obj.dir/mut/section.cpp.o src/CMakeFiles/morphio_obj.dir/mut/soma.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_asc.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_hdf5.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_swc.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_utils.cpp.o src/CMakeFiles/morphio_obj.dir/point_utils.cpp.o src/CMakeFiles/morphio_obj.dir/properties.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologyHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologySWC.cpp.o src/CMakeFiles/morphio_obj.dir/readers/utils.cpp.o src/CMakeFiles/morphio_obj.dir/readers/vasculatureHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/section.cpp.o src/CMakeFiles/morphio_obj.dir/shared_utils.cpp.o src/CMakeFiles/morphio_obj.dir/soma.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o src/CMakeFiles/morphio_obj.dir/version.cpp.o src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o && /usr/bin/ranlib src/libmorphio_static.a && : [48/48] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -flto -Wl,--dependency-file=binds/python/CMakeFiles/_morphio.dir/link.d -shared -o /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lhdf5 && cd /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313/binds/python && /bin/true /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/morphio copying build/lib.linux-x86_64-cpython-313/morphio/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio creating build/bdist.linux-x86_64/wheel/morphio/mut copying build/lib.linux-x86_64-cpython-313/morphio/mut/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/mut creating build/bdist.linux-x86_64/wheel/morphio/vasculature copying build/lib.linux-x86_64-cpython-313/morphio/vasculature/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/vasculature copying build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./morphio running install_egg_info running egg_info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to build/bdist.linux-x86_64/wheel/./morphio-3.4.0-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/morphio-3.4.0.dist-info/WHEEL creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-wheel-yy9ffs7x/.tmp-8pr24jv8/morphio-3.4.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'morphio/__init__.py' adding 'morphio/_morphio.cpython-313-x86_64-linux-gnu.so' adding 'morphio/mut/__init__.py' adding 'morphio/vasculature/__init__.py' adding 'morphio-3.4.0.dist-info/AUTHORS.txt' adding 'morphio-3.4.0.dist-info/LICENSE.txt' adding 'morphio-3.4.0.dist-info/METADATA' adding 'morphio-3.4.0.dist-info/WHEEL' adding 'morphio-3.4.0.dist-info/top_level.txt' adding 'morphio-3.4.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for morphio (pyproject.toml): finished with status 'done' Created wheel for morphio: filename=morphio-3.4.0-cp313-cp313-linux_x86_64.whl size=13839949 sha256=2f95016239d54a2333108ffc6b55fc5ddb60a9e39d4437d7c1f3f4692cd558fe Stored in directory: /builddir/.cache/pip/wheels/ee/c3/10/370becb4d63347b21ed8b192db03b5bd7c455f6dcc44ad4816 Successfully built morphio + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.neP6Yc + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + mkdir /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + DESTDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/version.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so ++ ls /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=morphio==3.4.0 + '[' -z morphio==3.4.0 ']' + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir morphio==3.4.0 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir Processing ./pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl Installing collected packages: morphio Successfully installed morphio-3.4.0 + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --record /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD' + rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-10.fc42.x86_64-pyproject-record --prefix /usr -l morphio + /usr/bin/find-debuginfo -j64 --strict-build-id -m -i --build-id-seed 3.4.0-10.fc42 --unique-debug-suffix -3.4.0-10.fc42.x86_64 --unique-debug-src-base morphio-3.4.0-10.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.4.0-10.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j64 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j64 /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 43 directories and 154 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6ZMftT Processing files: morphio-3.4.0-10.fc42.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZozyCN + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.4.0-10.fc42 morphio(x86-64) = 3.4.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: morphio-devel-3.4.0-10.fc42.x86_64 Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.4.0-10.fc42 morphio-devel(x86-64) = 3.4.0-10.fc42 morphio-static = 3.4.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit) Processing files: python3-morphio-3.4.0-10.fc42.x86_64 Provides: python-morphio = 3.4.0-10.fc42 python3-morphio = 3.4.0-10.fc42 python3-morphio(x86-64) = 3.4.0-10.fc42 python3.13-morphio = 3.4.0-10.fc42 python3.13dist(morphio) = 3.4 python3dist(morphio) = 3.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.14.1 rtld(GNU_HASH) Processing files: morphio-doc-3.4.0-10.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.qdjT2I + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + DOCDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/AUTHORS.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CHANGELOG.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CONTRIBUTING.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/README.rst /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/examples /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.JzGUEA + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: morphio-doc = 3.4.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debugsource-3.4.0-10.fc42.x86_64 Provides: morphio-debugsource = 3.4.0-10.fc42 morphio-debugsource(x86-64) = 3.4.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debuginfo-3.4.0-10.fc42.x86_64 Provides: debuginfo(build-id) = a51f5d7188353576f2bc7c95540c58316ce03ed9 libmorphio.so.0.0.0-3.4.0-10.fc42.x86_64.debug()(64bit) morphio-debuginfo = 3.4.0-10.fc42 morphio-debuginfo(x86-64) = 3.4.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.4.0-10.fc42 Processing files: python3-morphio-debuginfo-3.4.0-10.fc42.x86_64 Provides: debuginfo(build-id) = 5d606d4f8e735350f25f1bd71795e622cdaa79cc python-morphio-debuginfo = 3.4.0-10.fc42 python3-morphio-debuginfo = 3.4.0-10.fc42 python3-morphio-debuginfo(x86-64) = 3.4.0-10.fc42 python3.13-morphio-debuginfo = 3.4.0-10.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.4.0-10.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT Wrote: /builddir/build/SRPMS/morphio-3.4.0-10.fc42.src.rpm Wrote: /builddir/build/RPMS/morphio-doc-3.4.0-10.fc42.noarch.rpm Wrote: /builddir/build/RPMS/morphio-devel-3.4.0-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-3.4.0-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debugsource-3.4.0-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-morphio-3.4.0-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debuginfo-3.4.0-10.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-morphio-debuginfo-3.4.0-10.fc42.x86_64.rpm Child return code was: 0